Biological Molecules
Condensation and Hydrolysis Reactions
3Monomer definition:
A smaller, repeating unit from which larger polymers are made.
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2018 As Paper 1 Q2.1 (1 marks)
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3 things to always mention when describing a condensation reaction:
- Monomers joining together.
- Forming a (named if possible) bond.
- Releasing a molecule of water.
Note: all three points can be required for a single mark
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2019 A-Level Paper 1 Q10.3 (5 marks)
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Describe the hydrolysis reactions involved in the digestion of triglycerides: (2 points)
- Ester bonds are broken.
- By the addition of water.
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2023 As Paper 2 Q6.1 (2 marks)
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Carbohydrates and Sugars
7What types of glycosidic bonds cause branched and unbranched polymers of glucose?
1,4- only (amylose and cellulose) = unbranched.
1,4- and 1,6- (amylopectin and glycogen) = branched.
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2017 As Paper 2 Q1.1 (2 marks)
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June 2012 As Unit 2 Q3(b)(i) (2 marks)
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5 features of starch that make it a good storage molecule:
- It is insoluble so doesn’t affect water potential of cell or osmosis.
- It is coiled so is compact.
- It contains many glucose monomers for respiration.
- It is branched, allowing for fast hydrolysis.
- It is large so can’t leave the cell.
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2025 As Paper 1 Q7.2 (3 marks)
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Describe the structure of glycogen: (3 points)
- It is a polysaccharide of alpha glucose.Note: You had to state it was ‘alpha’ glucose.
- The alpha glucose molecules are joined by glycosidic bonds.
- It is branched and coiled due to its 1,4- and 1,6- glycosidic bonds.
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2017 A-Level Paper 1 Q2.1 (2 marks)
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2017 As Paper 2 Q1.1 (2 marks)
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4 ways the structure and properties of glycogen make it a good storage molecule:
- It has a helix structure so is compact.
- It is a polymer of (alpha) glucose so is easily hydrolysed.
- Its branched endings allow for greater surface area for enzyme action, causing faster hydrolysis.
- It is insoluble so does not affect the water potential of cells.
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2021 As Paper 1 Q5.1 (4 marks)
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Describe the structure of cellulose: (4 points)
- It has beta glucose molecules that alternate being flipped upside down.
- The beta glucose molecules are joined by glycosidic bonds.
- It forms long, unbranched, straight chains.Note: This is because of the alternate flipping of glucose molecules.
- It forms microfibrils.
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2023 A-Level Paper 1 Q2.1 (3 marks)
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June 2010 As Unit 2 Q1(c) (3 marks)
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Why are hydrogen bonds important in cellulose molecules? (2 points)
- They hold chains together by forming cross links.
- They are strong in large numbers so provide strength.
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January 2011 As Unit 2 Q1(c)(i) (2 marks)
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4 reasons cellulose is good at making cell walls:
- It is strong due to its compact structure, caused by its straight and long chains (which are caused by the flipping over of alternate molecules) which are held together by many hydrogen bonds.
- The bonds are difficult to digest for herbivores.
- It is insoluble which helps the cell resist osmotic pressure.
- Its fibres are permeable, allowing water and solutes to freely reach the cell membrane.
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Specimen A-Level Paper 1 Q4.3 (3 marks)
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Points 2-4 are not from a mark scheme, but are useful points to know.
Lipids
34 properties of triglycerides that make them useful in the body:
- Energy storage - they are an efficient store of energy due to their long hydrocarbon chains (in their fatty acids) which release a lot of energy when oxidised. Being insoluble, they also don’t affect the water potential of the cells they are stored in.
- Thermal insulation - they provide a layer of insulation under the skin, reducing heat loss.
- Buoyancy - fat has a low density, aiding in buoyancy.
- Nervous transmission - they form the myelin sheath, insulating nerves and speeding up transmission.
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Not from a mark scheme, but useful content to know.
What makes triglycerides a good store of energy?
Their high ratio of carbon-hydrogen bonds (which store a lot of energy as when they are broken they release a lot of energy) to carbon atoms mean they have a high energy to mass ratio.
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Not from a mark scheme, but useful content to know.
Compare and contrast the structure and properties of triglycerides and phospholipids: (8 points)
- Both contain ester bonds between glycerol and fatty acids.
- Both contain glycerol.
- The fatty acids on both may be saturated or unsaturated.
- Both are insoluble in water.
- Both contain C, H and O but phospholipids also contain P.
- A triglyceride has three fatty acids but a phospholipid has two fatty acids plus a phosphate group.
- Triglycerides are hydrophobic/non polar but phospholipids have a hydrophilic head and hydrophobic tail.
- Phospholipids form a bilayer in water but triglycerides don’t.Note: triglycerides form lipid droplets.
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2018 A-Level Paper 1 Q10.2 (5 marks)
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Proteins
5Describe how the structure of a protein depends on the amino acids it contains: (6 points)
- Its structure is determined by the position of its amino acids.
- The primary structure is the sequence of amino acids.
- The secondary structure is formed by hydrogen bonding between amino acids.Note: This is between the amine group on one amino acid and the carboxyl group on another amino acid.
- The tertiary structure is formed by interactions between R groups.
- The tertiary structure creates active sites in enzymes and complementary shapes in antibodies, carrier proteins and receptors.Note: this is a fairly random point that you should include in every question on protein structure.
- The quaternary structure is formed by the interactions between polypeptides.
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2020 As Paper 2 Q9.2 (5 marks)
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How should you describe the secondary structure of proteins? (2 points)
- Hydrogen bonds form between the NH group on one amino acid and the C=O group on another amino acid.Note: If you are going to mention where the hydrogen bonds form (which you may as well do), use the chemical structures not names (amine group, carboxyl group).
- This forms an alpha helix or beta pleated sheet.
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2018 As Paper 2 Q2.2 (2 marks)
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Why does a change in pH cause the tertiary structure of polypeptides to change?
Changes in pH change the ionic and hydrogen bonds between amino acids.
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2018 A-Level Paper 3 Q1.2 (2 marks)
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Describe why and how a gene is a code for the production of a polypeptide: (3 points)
- It has a base sequence.
- In triplets.
- This determines the amino acid sequence of the polypeptide.
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2021 As Paper 1 Q4.4 (3 marks)
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Describe how amino acids join to form a polypeptide so there is always an NH₂ at one end and a COOH at the other end: (2 points)
- Each amino acid is oriented in the same direction in the chain.
- This means that when the NH group of one amino acid forms a peptide bond with the COO group of another, there is always a free NH₂ group at one end and a free COOH group at the other.
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2020 A-Level Paper 1 Q01.5 (2 marks)
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Food Tests
5Describe the food test to show that a sample doesn’t contain reducing sugars but does contain non-reducing sugars: (4 points)
- Heat it with Benedict’s solution. If it doesn't contain reducing sugars, it will remain light blue.Note: It is important to mention this to show the absence of reducing sugars.
- Boil with acid, then neutralise.
- Heat with Benedict’s solution to 95 degrees C.Note: It is wise to mention the specific temperature.
- A red precipitate forms.Note: It is important to know it’s a precipitate that causes the colour change.
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2020 As Paper 1 Q1.3 (3 marks)
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How does a colorimeter improve the repeatability of Benedict's test?
It allows you to quantitatively test the colour change, so therefore standardises the results.Note: Both parts were needed for the mark.
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2019 As Paper 1 Q3.4 (1 marks)
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Why should samples be exposed to iodine and potassium iodide solution for the same duration of time in the test for carbohydrates?
To allow for equal time of diffusion of iodine into the sample, allowing fair comparison.
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Not from a mark scheme, but useful content to know.
Describe the two tests for lipids: (2 points for each)
Ethanol test:
- Add ethanol and shake, then add water and shake.
- A white, milky emulsion forms if lipids are present.Note: Remember to clearly describe adding ethanol first THEN water, and also remember to mention shaking at least once.
Sudan III test:
- Add Sudan III and mix.
- A red layer forms on the top if lipids are present.Note: I doubt you need to know both but it could be useful - always go with the ethanol test, though.
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2025 As Paper 2 Q3.2 (2 marks)
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2021 As Paper 2 Q1.3 (2 marks)
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2018 As Paper 1 Q5.3 (2 marks)
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2016 As Paper 1 Q2.2 (2 marks)
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Specimen As Paper 1 Q7.1 (2 marks)
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Describe the test for protein: (2 points)
- Add biuret reagent.
- The solution turns from blue to purple if protein is present.
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2019 A-Level Paper 1 Q10.2 (5 marks)
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Enzymes
8Explanation of the induced fit and how this allows enzymes to act as catalysts: (5 points)
- Before the substrate binds to the active site to form an enzyme-substrate complex, the active site of the enzyme is not perfectly complementary to the shape of the substrate.
- When the substrate binds, the active site changes shape so they are perfectly complementary to each other.
- This distorts, weakens, and/or bends bonds in the substrate.
- This causes the activation energy to be lowered.
- When the substrate leaves, the active site returns to its original shape.
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2021 A-Level Paper 1 Q1.1 (3 marks)
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2016 As Paper 1 Q6.1 (2 marks)
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Why does an enzyme not work with a molecule it’s not ‘designed’ for? (6 points)
- The wrong molecule is a different shape to the substrate.
- The enzyme is specific only to the shape of the substrate.
- Due to the specific shape of the active site due to the specific tertiary structure of the enzyme.
- This means the wrong molecule won’t be able to fit and bind to the active site.
- This is because they are not complementary.
- This means no enzyme-substrate complex forms.
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2015 As Unit 1 Q1(c) (3 marks)
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June 2010 As Unit 1 Q5(a) (3 marks)
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Why would the rate of an enzyme controlled reaction stop increasing despite substrate concentration increasing? (2 points)
- Enzyme concentration is now limiting the factor.
- Because all of the active sites are occupied.
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2021 A-Level Paper 1 Q1.4 (2 marks)
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4 ways to stop enzyme action:
- Boil to denature the enzymes.
- Add a strong acid/ alkali to denature the enzymes.
- Put it in ice to lower the temperature and kinetic energy so no enzyme-substrate complexes form.
- Add a high concentration of an inhibitor to prevent enzyme-substrate complexes forming.
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2021 A-Level Paper 1 Q1.3 (2 marks)
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Explanation of how a competitive inhibitor decreases the rate of enzyme-controlled reactions: (3 points)
- The inhibitor is a similar shape to the substrate.
- This causes it to fit in and bind to the active site as they are complementary.
- This prevents enzyme-substrate complexes from forming.
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2020 As Paper 2 Q5.3 (3 marks)
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Explanation of how a noncompetitive inhibitor decreases the rate of enzyme-controlled reactions: (3 points)
- The inhibitor attaches to the enzyme at a site other than the active site (also called the allosteric site)
- This changes the tertiary structure of the enzyme, changing the shape of the active site.
- This means the active site and substrate are no longer complementary so substrates can no longer bind to form enzyme-substrate complexes.
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2024 As Paper 1 Q8.1 (3 marks)
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2019 A-Level Paper 1 Q1.1 (3 marks)
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How can adding a substance (that’s not the substrate) that binds to enzymes increase the rate of an enzyme-controlled reaction? (3 steps)
- The binding alters the tertiary structure of the enzyme.
- This causes the shape of the active site to change.
- This causes enzyme-substrate complexes to form more quickly, further lowering activation energy.Note: basically it works like a noncompetitive inhibitor but increases the rate of reaction instead of decreasing it.
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2018 A-Level Paper 1 Q4.4 (3 marks)
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1 similarity and 2 differences between the lock and key model and the induced-fit model:
Similarity:
The substrate binds to the active site to form an enzyme-substrate complex.
Differences:
1. The active site changes shape in the induced-fit model, but not in the lock and key model.
2. The active site is not initially complementary to the substrate in the induced-fit model, but is in the lock and key model.
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2022 As Paper 1 Q05.2 (2 marks)
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RP 1 – Enzymes
4Brief explanation of the enzymes practical:
If you are trying to find the effect of temperature on enzyme activity, you add a solution of milk suspension to a test tube, allow it to equilibrate to a given temperature in a water bath, then add a solution containing the trypsin enzyme which breaks down the milk proteins and makes the solution turn clear and colourless. To find the rate of the reaction, time how long it takes for an ‘X’ written on the opposite side of the test tube to become visible. Then, conduct this experiment at different temperatures.
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Not from a mark scheme, but useful content to know.
What is the main issue with the enzymes practical and how can it be overcome using equipment?
The point at which the cross becomes ‘visible’ is subjective and will vary depending on the person judging it.
To overcome this, use a colorimeter to provide a quantitative, standardised measure of when the solution has reached a certain point of clearness and colourlessness.
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2019 As Paper 1 Q03.4 (1 marks)
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3 control variables in the enzymes practical:
- pH.Note: control this using a buffer solution.
- Enzyme concentration.
- Initial substrate concentrations.
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Specimen As Paper 1 Q02.1 (1 marks)
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Why is using a pH meter better than using a pH indicator? (3 points)
- It gives quantitative data.
- Colour change can be subjective, but numerical readings aren’t.
- This means a meter provides greater accuracy.
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2016 Unit 1 Q3(a) (1 marks)
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DNA
15What bonds does DNA contain? (3)
- Phosphodiester bonds.Note: not just ‘ester bonds’ - always say ‘phosphodiester’.
- Hydrogen bonds.Note: these occur between complementary bases and hold the two strands together.
- Glycosidic bonds.Note: these form between the deoxyribose sugars and the bases.
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2021 As Paper 1 Q1.1 (2 marks)
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Describe how phosphodiester bonds form between nucleotides in DNA: (3 points)
- They form in condensation reactions.
- Catalysed by DNA polymerase.
- Between phosphate and deoxyribose.
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2020 As Paper 2 Q2.1 (2 marks)
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Explain how the structure of DNA is related to its functions: (6 points)
- The sugar-phosphate backbone provides strength to the molecule and protects the bases.
- It is a large molecule, meaning it can store lots of information.
- It is a helix/ coiled so it is compact.
- The base sequence codes for amino acids.
- It is double stranded so replication can occur semi-conservatively.
- Its (fairly) weak hydrogen bonds allow for replication.
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2018 As Paper 1 Q3.2 (2 marks)
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2014 As Unit 2 Q8(a) (6 marks)
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What is the use of complementary base pairing?
It allows for accurate replication.
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2018 As Paper 1 Q3.2 (2 marks)
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3 similarities between the DNA in eukaryotic and prokaryotic cells:
- The nucleotides have the same structure.
- The nucleotides are joined by phosphodiester bonds.
- The DNA in mitochondria/ chloroplasts is very similar to the DNA in prokaryotes (circular, no introns, not bound to histones)
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2018 As Paper 2 Q9.1 (5 marks)
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Differences between the DNA found in chloroplasts and the DNA found in the nucleus: (4)
- DNA is shorter and contains fewer genes.
- DNA is circular not linear.
- DNA is not associated with histones
- DNA contains no intronsNote: Essentially the DNA in chloroplasts is the same as the DNA found in bacteria, because chloroplasts and mitochondria evolved from bacteria.
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2019 As Paper 1 Q1.1 (3 marks)
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Full DNA replication explanation: (8 points)
- DNA helicase breaks the hydrogen bonds between strands, causing the strands to separate.
- Each strand from the original molecule acts as a template.
- Nucleotides line up in complementary pairs due to complementary base pairing.
- A with T, G with C.
- Hydrogen bonds reform between the complementary bases.
- DNA polymerase joins adjacent nucleotides.
- Forming phosphodiester bonds.
- Each DNA molecule consists of one template/ parent strand and one new strand.
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2025 As Paper 1 Q3.1 (5 marks)
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2021 As Paper 2 Q9.2 (5 marks)
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What is the role of DNA polymerase in DNA replication? (3 points)
- Joining adjacent nucleotides.
- Catalysing condensation reactions.
- Forming phosphodiester bonds.
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2020 A-Level Paper 1 Q5.1 (2 marks)
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What is the role of the original strand in DNA replication? (2 points)
- To act as a template for the new strand.
- To determine the order of nucleotides.
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2019 As Paper 2 Q3.3 (3 marks)
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What is the role of the free floating nucleotides in DNA replication? (2 points)
- To form complementary base pairs.
- To form the complementary strand.
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2019 As Paper 2 Q3.3 (3 marks)
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What are the only two biological molecules that can be coded for by genes?
- Polypeptides/ proteins.
- Functional RNA (tRNA, rRNA)
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2023 As Paper 2 Q1.2 (1 marks)
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Definition of universal:
The same codon always codes for the same amino acid.
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2023 As Paper 1 Q1.2 (3 marks)
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Definition of non-overlapping:
Each base is only part of one triplet and adjacent triples do not overlap.
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2023 As Paper 1 Q1.2 (3 marks)
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Definition of degenerate:
More than one codon codes for each amino acid.
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2023 As Paper 1 Q1.2 (3 marks)
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2 reasons mutations of genes sometimes cause no change in the structure of polypeptides:
- The mutated triplet codes for the same amino acid.Note: this is possible because DNA is degenerate.
- The mutation occurs in an intron/ non-coding region, which is removed during splicing.Note: a change in primary structure not causing a change tertiary structure was not an acceptable answer - I’m guessing because the question said 'no change' (at all) in structure.
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2019 As Paper 1 Q1.4 (2 marks)
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ATP
6What are the 2 primary uses of ATP?
- Releasing and providing energy for processes such as muscle contraction or active transport.Note: It's important you name a process in these types of questions.
- Increasing the reactivity of molecules by phosphorylating themNote: these two should be your go-to.
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2016 As Paper 1 Q3.2 (2 marks)
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Why does ATP get broken down quickly and only release a small amount of energy, and why is this useful?
It is broken down quickly and only releases a small amount of energy as only a single bond is broken.
It's important it can be broken down quickly so energy can be provided for reactions quickly.
It’s important it only releases a small amount of energy so energy isn’t wasted by being lost as heat.
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Specimen A-Level Paper 2 Q2.2 (2 marks)
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4 other beneficial features of ATP:
- It can easily and quickly be reformed.
- It phosphorylates substances when it is broken down by releasing a Pi, making them more reactive.
- It is soluble.
- It doesn’t leave cells.
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Specimen A-Level Paper 2 Q2.2 (2 marks)
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2016 As Paper 1 Q3.2 (2 marks)
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1 negative property of ATP and its consequence:
It is unstable, meaning it can’t be stored.Note: This means a large amount needs to be synthesised daily, as it is constantly being broken down.
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June 2011 A-Level Unit 4 Q1(d) (2 marks)
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What happens when an enzyme is phosphorylated? (3 points)
- ATP is hydrolysed into ADP + Pi and the phosphate associates with the enzyme.
- This changes the shape of the active site.
- This causes the active site to become complementary to the substrate, activating the enzyme.
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2020 A-Level Paper 1 Q5.3 (2 marks)
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Describe the structure of ATP and how it is broken down and resynthesised: (3 points)
- It contains ribose, adenine and 3 phosphates.
- It is broken down in the hydrolysis reaction: ATP -> ADP + Pi by ATP hydrolase.
- It is resynthesised in the condensation reaction: ADP + Pi -> ATP by ATP synthase.
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2024 A-Level Paper 1 Q10.3 (4 marks)
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Water and Ions
6Why is it important that water has a high specific heat capacity?
It allows it to act as a temperature buffer and maintain optimum temperature for enzyme action and reactions inside cells.
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2018 As Paper 1 Q8.1 (2 marks)
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2020 As Paper 1 Q2.3 (2 marks)
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Why is it important that water has a high latent heat of vaporisation?
It allows it to provide a cooling effect to organisms when it evaporates.Note: this is because a high latent heat of vaporisation means lots of energy is required for it to change from liquid to gas, meaning lots of heat energy is required to provide the energy for its evaporation.
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2019 A-Level Paper 1 Q10.1 (5 marks)
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Why is it important that water is a solvent? (2 points)
- It allows it transport dissolved substances around organisms.
- It allows metabolic reactions to occur at a faster rate because they occur faster in solution.
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2019 A-Level Paper 1 Q10.1 (5 marks)
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2 reasons it's important water molecules have cohesion to each other:
- It allows columns of water can form.Note: this is important for transpiration in xylem.
- It allows surface tension to occur on the top of bodies of water, supporting organisms.
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2019 A-Level Paper 1 Q10.1 (5 marks)
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What property of iron ions allow them to carry out their role? (2 points)
- They are charged.
- This allows them to associate with O₂ to form oxyhaemoglobinNote: this is a good reminder that if the question doesn’t state the role of an ion, you should do it in your answer, even if it seems too obvious to mention.
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2022 As Paper 1 Q6.1 (2 marks)
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2 ways phosphate can be used in cells:
- Phosphorylating other substances to make them more reactive/ change their shape.
- To form DNA/ RNA/ phospholipids. I’d always go with phosphorylating substances to make them more reactive, not activating enzymes.
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2025 As Paper 1 Q2.2 (3 marks)
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